Eucalyptus transcriptome analysis revealed molecular chaperones highly expressed in xylem
نویسندگان
چکیده
Background Plant development is very plastic, being coupled to environmental cues. As sessile organisms, plants must be able to respond rapidly to environmental stresses such as changes in temperature and salinity, heavy metals and water deficit. Efficient stress response systems are prerequisites for plant survival and productivity [1]. Molecular chaperones (or Heat Shock Proteins – HSP) compose a ubiquitous class of proteins involved in cellular protein quality control (PQC) and homeostasis. They play a critical role in folding and degradation of polypeptides, and therefore, in maintenance and modulation of cellular pathways, which are dependent of function (correct folding) and availability (stability and degradation) of involved proteins, under normal and stress conditions [2]. Genetics and proteomics studies of wood formation have highlighted some chaperones up-regulated in xylem of Eucalyptus, Pinus and Populus species, stating that they may play an important role in cell wall formation and xylem development [3,4]. Different species of Eucalyptus are known for their superior performance in growth, wood quality and resistance to different types of stress [5]. Such characteristics are probably driven by distinct gene expression coordination in xylogenesis. Eucalyptus grandis is one of the most planted species in the world due to its rapid growth, wide adaptability and wood quality. Eucalyptus globulus wood has higher S/G ratio which provides high yields in cellulose extraction [6]. Lignin extraction consumes large quantities of chemicals and energy, and many efforts have been made to improve this process by modifying lignin content or composition in trees, in order to reduce lignin content or make it easier to extract. Results have been achieved by supplementation and genetic modification [7,8]. This study aims to identify chaperones possibly involved in wood formation and quality of wood for pulp and paper industries.
منابع مشابه
Comparative transcriptome analysis of tree Eucalyptus species using RNAseq technology: analysis of genes interfering in wood quality aspects
Background The Eucalyptus wood is one of the most important raw materials for pulp and paper industry. Brazil is currently the first producer of short-fiber pulp and sixth in total production of cellulose. To maintain the industrial competitiveness, investment in genomic research started in 2002 with the GENOLYPTUS project (Brazilian Network of Eucalyptus Genome Research). Recently, a new trans...
متن کاملIn silico comparative analysis of glycoside hydrolase (GH) family 10 endo-(1-4)-beta-xylanase genes from Eucalyptus grandis and Arabidopsis thaliana
Background The hemicellulose xylan constitutes the major non-cellulosic component of plant secondary cell walls. It has been shown that xylan adsorbs to cellulose fibres and also covalently binds a carbon moiety of lignin [1,2]. Eucalyptus is an important hardwood tree genus used in the pulp and paper industry and has potential as biofuel feedstock. Xylan removal is expensive and uses environme...
متن کاملInterspecific discovery and expression profiling of Eucalyptus micro RNAs by deep sequencing
Background Micro RNAs (miRNAs) are a class of small (~21 nucleotide) non-coding RNAs that recently gained much attention due to their perceived role as master regulators of gene expression in Eukaryotes, responsible for fine tuning gene expression regulation and, in plants, has been shown to be involved in a diverse range of biological processes such as plant development and architecture, flowe...
متن کاملTranscriptome analysis of immature xylem in the Chinese fir at different developmental phases
Background.Chinese fir [Cunninghamia lanceolata (Lamb.) Hook.] is one of the most important native tree species for timber production in southern China. An understanding of overall fast growing stage, stem growth stage and senescence stage cambium transcriptome variation is lacking. We used transcriptome sequencing to identify the repertoire of genes expressed during development of xylem tissue...
متن کاملStrigolactone-mediated Stimulation of Secondary Xylem Proliferation in Stems.
Secondary xylem (wood) accounts for a large proportion of the terrestrial biomass. Understanding how secondary xylem develops and proliferates is a challenge to enhance our capacities for biomass production. Recent reports revealed that the plant hormone strigolactone is key for the development of secondary xylem. Here, I describe a protocol for strigolactone-mediated stimulation of secondary x...
متن کامل